The Enterprise edition is an advanced builder and repackager that can be used to create MSI packages and convert complex installations into the MSI format. Its changes monitor can track service installations and environment variables changes and can work on the local machine and on Hyper-V, VMware and VirtualBox VMs connected remotely.
You can try EMCO MSI Package Builder: -package-builder/convert-exe-to-msi. It uses more advanced capturing technology than before&after snapshots, so it can associate all captured changes with processes that perform these changes. As the result you can filter out unwanted changes. 2b1af7f3a8